Scaffold Ga0066605_10024140

Overview

Basic Information

• Taxon OID: 3300004279
• Scaffold ID: Ga0066605_10024140
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2982
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044224	Metagenome / Metatranscriptome	155	Y
F046070	Metagenome / Metatranscriptome	152	N
F048244	Metagenome / Metatranscriptome	148	Y
F101084	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066605_1002414010	F048244	N/A	MKVELTQKEIDRLYFDLKDYVKTLYNVDRLNELSENEKEECKLELNLIEKFSKL*
Ga0066605_1002414014	F044224	N/A	MKLNKIIQSYKNSNMNKELLSYKLKNYYNLSENERIIIKYSI*
Ga0066605_100241405	F046070	N/A	MNLSRIKELRNVAHDAQTKMDLISKRIMQGGLSLDQQILHLDNFTANQTRHMLCNEELIKLLKNE*
Ga0066605_100241406	F101084	N/A	MYRDDLVYDFNEEMWNLYHNGTIDNIDDFWDEKNTWIDNQVIYTYECKEICDKLDYDVFEEHDVFGKANNWSQAAYAAIYDLLNDHNDALTYDKMKLQEEEANA*