NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066609_10107470

Scaffold Ga0066609_10107470


Overview

Basic Information
Taxon OID3300004278 Open in IMG/M
Scaffold IDGa0066609_10107470 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)916
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004164Metagenome / Metatranscriptome450Y

Sequences

Protein IDFamilyRBSSequence
Ga0066609_101074702F004164AGGAGMTYMNTLRLIIFLLFLPIMGQASEDLKYSYVHDSIGDRDDADGDVTFRTHQDNGVMYEYAHVNIKWKGGFFKSTITDDFIQKKEIKNGLVLYDIVEGDQKKGYSVFSRHIDVKNYPVGFETKKIINDEGRHPAFSDYDWIFKFKAESVESIQINGQMRKSIHTKLWGSRPTSTTNCRMTQPGMNFSNSTGEIHVETWFDLQNNKLLKQVFTK

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