Scaffold Ga0066398_10014021

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0066398_10014021

Scaffold Ga0066398_10014021

Overview

Basic Information
Taxon OID	3300004268 Open in IMG/M
Scaffold ID	Ga0066398_10014021 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1240
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029598	Metagenome	188	Y
F045042	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066398_100140211	F029598	AGGAG	VRRADLVCAVLMLACSGCASQAGVSASDVESVARGERVTVLVLGTGNQWASRTEPDLYMLVQAPRPTPTEKVQTDLYECQTAVRKIWNSDRTQTDRTILINEGPAYNPGAQVSRAVMNLLAKTYGDCLQQKGY
Ga0066398_100140213	F045042	GAG	VVVSRSAVAWLLVALAPVAGCVAARTAPPTTSGTGWGYVEEPRSGTGARRVLFTTDRYVCERSRHEDVKPDFTVPPACVPLTIGRGEGYWLIPALYLPTGSYIGGSTREECEAMEQRQGRNMPVQPHGFCRAASVRPAP*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.