NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066396_10007373

Scaffold Ga0066396_10007373


Overview

Basic Information
Taxon OID3300004267 Open in IMG/M
Scaffold IDGa0066396_10007373 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1236
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001831Metagenome / Metatranscriptome628Y
F036134Metagenome170Y
F089991Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066396_100073731F001831N/AVVSRFVRAGPGALVWGLALFLAACAIANTPQQELAYARWDQCRSLNGELVRIDLDGRITFRSSTAGGRQEVLQCLADAGRSGPPLPQPAAVGFPGGP*
Ga0066396_100073732F036134N/AMSNLDDDDRGLDERGAGSTETPRLWRVAGPHPPEWRDTFLRLAAETAEGRMLAPAFHGNILSFNAGPQGSNVLRLIKDLMVQATFAVEHQGCGGVKSYVGDTRISMTCACGAEIVRRLTG
Ga0066396_100073733F089991N/AMAKSSPEKKAPVEVRALPMDLQLGDRLADERSEWQVIGRPYATGGGKTVHVRVESLKQPGVTEIRSWGAHERVSIHRATPDESKRRD*
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