NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058867_1204050

Scaffold Ga0058867_1204050


Overview

Basic Information
Taxon OID3300004260 Open in IMG/M
Scaffold IDGa0058867_1204050 Open in IMG/M
Source Dataset NameWastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time E -22min-Aerobic_ RNA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)520
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Source Dataset Sampling Location
Location NameMadison, Wisconsin, USA
CoordinatesLat. (o)43.076217Long. (o)-89.411742Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089747Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0058867_12040501F089747N/AKKMKVLFLILISIALALSLQVQFPIVLLYNGACDPWARGAACHGTATSEHIATHINANAGAKTSVTNVIGARSRNFGNATYTGSNSYTVYGNVTYGVFDEHAIYFSSLNGFCIPNCTDSHAIFIDTGVINGGLGAYKNATGTYSAIQQPFHGKPGVEFWFNALITLDK*
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