Scaffold Ga0007787_10015934

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10015934
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3090
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003601	Metagenome / Metatranscriptome	477	Y
F033776	Metagenome	176	Y
F042290	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100159342	F003601	AGTAGG	MTDYTDDQLLAMAMANIGEFIHDNSPHYVLIEKDPRNEDDYDSWTYGMEVLPSDHTWYHTSIDVSVNPSNGDVA*
Ga0007787_100159348	F033776	GGA	MASDRQPRNKGRNYTVNIRMTKEEIEAARKLGDGNISMGFRQAIRYACWKDMKPIKLSTTLRSAAIMAAEWEQRMGELTLQQ*
Ga0007787_100159349	F042290	N/A	VSVATDTEVMTLTYRGCAYNKEEETKKNKDWWNLAHRPWLSLTYRNIRYLPYYVGGLIK*