Scaffold Ga0007787_10001700

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10001700
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7746
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F012452	Metagenome	280	Y
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_1000170011	F025683	GGAG	MVLDLLDPETLGRLIGVIFLMVLGGAAGYAKGFKEGKREGMARRKAISRHMSNKVAD*
Ga0007787_1000170012	F012452	AGGTGG	MAFLDNYEGNKERTDRWNLTYPEGRLQAHIVEFNAEKGYILVQAKAWRNQSEIEPAGIDYAYGFIAAYNPNMKRWFVEDTTTSALMRVMALVMGGTEKATRETMEQVEKLSTKVATADVKADYDYWTTKHGDVPSYATAAEAEQSGIPSLGSSIDEIANQLGGQLVEEKPRCEHGTRVWKTGESAKTGKAWGGYFCTEKAKANQCEPVWYQLGSTGQWVVRLP*
Ga0007787_1000170013	F000403	GAG	MEMIDVKTMTCKLLCNGEVIAEYKVEQCDKCSQITKLDSFGYQKGYDKHEKVIWFCGGCR
Ga0007787_100017005	F003134	GGTGG	MTQWTPVWLVEIDGVSYTDAVLANLTIRSGRTNIYEQAQAGYVNLQLLDVNQATIPVSINSSISVQVQDTSSTYVPIFGGTVVDIAVEVRDVGSTMFTQTYSITALGALSRLPKALTNGVLSKDFDGDQIWEILSDLLLNTWAEVPAAETWADYDPTTTWATAENVGLGEIDRPGDYELAARSSERTDVYSLVSKLATSGLGYIYEDAFGRISYADATHRSLYLSNNGYVQLTANQARAAGLRVETRAGDVRNNLTIQYGATSSAEQSASDADSILQYGTLSQIISTTLHNSADATQQANFYLALRKTPQAIFSEITFDLTNPELDDSDRDNLIGVFMGEALSINDLPANMGGIFQGFVEGWSFQASYNQLSITLNISPTAYSLQALQWDEISAAFTWSGVSPTLDWARATIVV*