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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300004240 Open in IMG/M |
| Scaffold ID | Ga0007787_10000705 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10713 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (85.19%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004789 | Metagenome / Metatranscriptome | 423 | Y |
| F007028 | Metagenome / Metatranscriptome | 359 | Y |
| F069735 | Metagenome | 123 | N |
| F101035 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0007787_1000070512 | F007028 | GGA | MPKITQTAEEQYNGSPIDGVMSTIGGELSISTNPVLICGVNRKVNIGNFENVDVYSAIALPLNNVSLEDQEKLTEAVKEAASYGFSLVSKETGERYQIIKDSQQGR* |
| Ga0007787_1000070516 | F069735 | GAG | MNLQSMQRLNELLSEFIDPQIKEVVEAYATGSKDSEYFISIPDMNTVDLTIAELASLVARSSNVYGRVTRFAGMARAYYKLVEGRYKKVYKANRVGKNEAEREANALEAAENEYTALITAEAIVNLAESMEAAARVSSESCRKLMDKVQSIQIASSREEKGFYSESDFNTY* |
| Ga0007787_1000070526 | F004789 | AGGA | MAVKGTYKNPVNNWCWVFCPSCNRCQDKGRYTKCKGCSGRYDPEGIIEPDTQDYCDCKNGTLRWRTKQGKLILTKFKTNPFKGEVKYEKKSEDERDWDSYVNDMREKLNDPNWNPITIVDED* |
| Ga0007787_100007059 | F101035 | AGGA | MEAVTVAIIAAVGTILAALVQKGRKENKEDHGMVVNILSDVKDDIIKLHHKIDHVDLQVDKVEDKIDDHLQSHRRNKKY* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |