Scaffold Ga0063455_100000056

Overview

Basic Information

• Taxon OID: 3300004153
• Scaffold ID: Ga0063455_100000056
• Source Dataset Name: Grasslands soil microbial communities from Hopland, California, USA (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9246
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location

• Location Name: USA: Hopland, California
• Coordinates
  • Lat. (^o): 38.99297339
  • Long. (^o): -123.0674491

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015136	Metagenome / Metatranscriptome	257	Y
F016618	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063455_1000000566	F016618	AGGA	MEDFSDQIENITQELQALHVKLRWSTFQNADSGDQDRILNNLLNAGLGHDLKKAVDLLSQFLWCYIESAAARINADGVDYAQQSFRLTQVTEVLRLLHHSACPLKESLASIEQATMTVARNAEATVMHRPLTIEKSA*
Ga0063455_1000000567	F015136	AGGAG	MNKSIYKMRAVFFFATLALLSLCSFAKDKPKDATVNLHGAVMDSQCAFNVHSDAHSHEWMTSRGIQGANNEETCTRHCVKDMGGSYVLVVKKDVYKIDDQVKAEQFAGKKVKINGSLDAETHTLHVFDMEEDK*