Scaffold Ga0062386_100105358

Overview

Basic Information

• Taxon OID: 3300004152
• Scaffold ID: Ga0062386_100105358
• Source Dataset Name: Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2170
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008672	Metagenome	329	Y
F011724	Metagenome	287	Y
F042698	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062386_1001053581	F042698	N/A	MSIAVSTANRDLVVDNRGYLPALATLDVTGMTAAATNTVPHGLPRIPRRVWFTAVGSGANAPNCSLDTSSVAAGFDATNIYIFTPEGVTGVLVHVEY*
Ga0062386_1001053582	F011724	N/A	MSYCTVDDVCSAFPRFVRNAPNSIQDAQIQDWIDDRKARVRSALYARAIDPDAMELTPDQANFLRALNRDGAVADLGDALQGNVALQPGEYSQAAERRKSFERQIAEIKQGLYDKFFSQLARTVEIEPTLGGIAGGETDRSTAFDRGEDKAFSKNEVF*
Ga0062386_1001053583	F008672	N/A	MPRTKMWTSYYNAGLSKQVIRQLLAVVNRDIQAALDFVSGEPGSYVPFAEYDLAFLPVQQFPAILLTPDTVTFDEAANGTLHQTMRLSCVITLTHQDRNTLAEMTQDYARAVRAVLDTLWESTPGDFLLTNLPLPSPPFPNGALSPGLASGKLMKIFAEGHTFEEIRRGPQSGFAMAATMSIIVEIEET*