NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062386_100045895

Scaffold Ga0062386_100045895


Overview

Basic Information
Taxon OID3300004152 Open in IMG/M
Scaffold IDGa0062386_100045895 Open in IMG/M
Source Dataset NameCoassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3281
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005)(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F006905Metagenome / Metatranscriptome362Y
F013663Metagenome / Metatranscriptome269Y
F014996Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0062386_1000458953F013663GGAVPTRPDRDGDEQLRLLAASWEEAARHWQDEVARQFEADHWTPLVQQSRGYLEALRSLLDMFEAAERDTEF*
Ga0062386_1000458954F014996GGAVTTVHADIDALKGLHEAMVRFRYAQQEVAERGGDEIELTRASLAAKASHWQARLEQDRAELEACRARGGEEAAPDCSAYARAVEQTGERLELIRRWQQRVEVEADEFRGMAGVFGDLLDSGLPRAETQLLALITSLEAARRVQASGS*
Ga0062386_1000458955F001698AGGAGMSGVINDIEALTEFRAHLMQFNRDLAENFATIRGHWRELGEVWRDDMYRRFGEALDEVTPGITQYLAATEAHEAHLAVLIDRLRGYLETGLGTGAGTSRAESDRGKSA*
Ga0062386_1000458956F006905N/AIDALRVVLHEVPEDFPDRNREANRFLPPLAASVLAIMREQEIDIPYSSRVEHIAAGGVAGYPDIVKLSLDEIAAEFDGLCHRPGHQ*
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