Scaffold Ga0066602_10440144

Overview

Basic Information

• Taxon OID: 3300004151
• Scaffold ID: Ga0066602_10440144
• Source Dataset Name: Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 589
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location

• Location Name: University of Edinburgh
• Coordinates
  • Lat. (^o): 55.9225
  • Long. (^o): -3.1724

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023544	Metagenome / Metatranscriptome	209	Y
F074573	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066602_104401441	F074573	N/A	ADNTSVLFLNPDVIQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGVAVLASITPTGSVVTTPRNSAYVKRYLT*
Ga0066602_104401442	F023544	GGAG	MNEDEHVEVNEDYYLKGNLEAGVDGVFRQNDKLFNEVKSGTWSQTFKTNNIDYKVGAIDGERYVQYDQKNVEAIREYCKGRREFYQMIGTTDNP