NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066632_10180468

Scaffold Ga0066632_10180468


Overview

Basic Information
Taxon OID3300004149 Open in IMG/M
Scaffold IDGa0066632_10180468 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG03_land_8/20/14_0.80
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)675
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002184Metagenome585Y
F019952Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0066632_101804681F002184N/AMKYMAKYSHVCWDDYPKPVQKRCQQVLNTEELCSIPCKDNC
Ga0066632_101804682F019952N/AMVQTVKSHRLIPGGRVLLLEKPRALCRILFSIKALTGSTTEHIAHISFDDPTFRSYYIFNGYVQELEAKGEGICQGDIWVRNVSSEEIVFVVTEILV*

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