Scaffold Ga0058897_11118243

Overview

Basic Information

• Taxon OID: 3300004139
• Scaffold ID: Ga0058897_11118243
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1127
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.531427
  • Long. (^o): -72.189946

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026387	Metagenome / Metatranscriptome	198	Y
F081118	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058897_111182432	F026387	GAGG	MRRDFTLRKRMILSGVILLVLADVALAAYSWRLSSAPRAPRDQLIAETTQHNLLKADIKRAQDIRENIPAIQKDCDLFEQSLFPASSGYSSVRSELGATAKKNGIRLDDLALKETKIANRGITEVAIDATVDGDYKSVVGFLNGLQRSSNLYQVDSLSLATENANLAFPNVIKVALHLKTYFRTGA*
Ga0058897_111182433	F081118	GGA	MKQKKQLAVLAVLLLTAGVIWFLYFDRDRPVVTADAGSGAQNPPLLSVENPRLHTDRLE