Basic Information | |
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Taxon OID | 3300004125 Open in IMG/M |
Scaffold ID | Ga0066182_10018986 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1396 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000473 | Metagenome / Metatranscriptome | 1097 | Y |
F012975 | Metagenome / Metatranscriptome | 275 | Y |
F073544 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066182_100189863 | F012975 | GGAG | VLNLTLKGVEVFMERSKHNKQESYWDNYDLLIWKKDPGGFTNVKGMFRKDSWGIAERVPVNENGIWKLPKHYVKYFK* |
Ga0066182_100189865 | F000473 | AGG | MEFINKDKDHFKHGINLWTGEPNKAVFYTKEMSLKIRDLKKPVPDLMLDVVQYPEFLAVRLYEDNFVQYEGSKKEQVIDYVGKVKKLIESYGVRCELEGVPSARILRSN* |
Ga0066182_100189866 | F073544 | AGG | VREYYEVINIVFIHELRLWGTCDSLGLYASKIKYQKDGIEYEDMFDNEEFTVMEEIVLEHLEEDN* |
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