Basic Information | |
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Taxon OID | 3300004114 Open in IMG/M |
Scaffold ID | Ga0062593_101941342 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 652 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Source Dataset Sampling Location | ||||||||
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Location Name | Wisconsin, United States | |||||||
Coordinates | Lat. (o) | 43.2958 | Long. (o) | -89.3799 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003138 | Metagenome / Metatranscriptome | 505 | Y |
F003682 | Metagenome | 474 | Y |
F014558 | Metagenome | 262 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0062593_1019413421 | F014558 | N/A | SAAWVGGGEMNFVLLRAEYDLHKERAYVEFRAPDADGGEAITTAIFSYKTVDRYSKSRVKEEVVRKARQLLKKAAVAT* |
Ga0062593_1019413422 | F003682 | AGG | MSDLSVAIDRNDIVISKPSSGFSVTYRREGRVLVADDQMRDDPSAEKLIFLVRAWKAAFAKAQSLGWLY* |
Ga0062593_1019413423 | F003138 | N/A | RTAIYHPPKSGMPYLVVTVSPEGVTATAVESKEEARVLASKKTMKVDVQEAS* |
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