Scaffold Ga0062593_100254212

Overview

Basic Information

• Taxon OID: 3300004114
• Scaffold ID: Ga0062593_100254212
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1455
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.2958
  • Long. (^o): -89.3799

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021567	Metagenome / Metatranscriptome	218	Y
F041229	Metagenome / Metatranscriptome	160	N
F082834	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062593_1002542121	F082834	N/A	MMRLAGIELTDESLLALVVRLRRADLDNQADRIVHALMSMQTEVTLTDPDRVAILTVLDDPPDGLAELRGALLQEHARKRHSVV*
Ga0062593_1002542122	F041229	N/A	LRAYPGAVARGRHPSESGQTIGEYAVVIAGIAVVCLVAALFLGAVIANRVREGKPPAPMETFEPPRNSPQLVWPRRLEDCENGGWRNYVQFNNERECKDYVRGVAS*
Ga0062593_1002542123	F021567	GAG	VTDAVSPIPDTEHWSYGSFQFDLDTARRTVPLVRDDGTAVAFTVPEFVSEPRDLAEISRIVIAACERW