Scaffold Ga0055584_100296889

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100296889
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1657
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017499	Metagenome / Metatranscriptome	240	Y
F035780	Metagenome / Metatranscriptome	171	Y
F096215	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1002968892	F017499	N/A	MSRYNSRMHGVTEDNCKVDLNWGFDHVLGYWYDIIETRNGEENVIEEWHSGMGGSRGKMLDFLIKYNCPEKHRSMVALDMEF*
Ga0055584_1002968895	F096215	N/A	MADLQRGDKVTWVAEMQCVPHPEGKTDRKGEVLPVFRDKDMTGTIVNSHYDNKFTVRPDGYTTPRGMDSYYDKMVPGKKLSKI*
Ga0055584_1002968896	F035780	N/A	MSIQIKTEKEVWWASTKEYDLEVNGENVSVRIAETPKETEFFEWNETTGWEPADIDSGLMKEVYDAWSNGEIE*