Scaffold Ga0055584_100199120

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100199120
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2033
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F059985	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1001991202	F059985	N/A	MIKIVLEPARNGVIKRVIDDNHGGGREQWTSTDVFESNEDSRNKYEYIMRFFFELCEDLGLECGNKFEKDVLKINTEWGTHYEPTQKEIQSKIKELQAEIDLLTEWKQT*
Ga0055584_1001991203	F008190	N/A	MEANIEFNFIYSNDAVRVKSFLGSVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTVLDRNTTTSIFYVLGNLNEPTVEGIKRYVESLTDKEFQYNIYHSPDINVNGSAKLFENVVEFE*
Ga0055584_1001991204	F004606	GGA	MKAHRIFTKGQTVYCLLSSFSKPNVLLPIKGLIVDTQWDPINPLYQIRIIKMYDNMKYLKTHFFDMNFKYEFNNRARKMPIKKEDFKNVKSLEDRFDESDRERLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNVRFKRGWLDKFQSGDIDIDKYLDSLG*