Scaffold Ga0055584_100151077

Overview

Basic Information

• Taxon OID: 3300004097
• Scaffold ID: Ga0055584_100151077
• Source Dataset Name: Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2341
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, North Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016269	Metagenome / Metatranscriptome	248	Y
F029927	Metagenome	187	Y
F035744	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0055584_1001510772	F035744	N/A	MNNTINFSDLEKQKLIERISHVLNYTGAYKELHKLLVDREEVLLPSDMENLADELEDFIFNYTIIE*
Ga0055584_1001510773	F016269	N/A	MHINDFMAICEQATIDPVLASEDDGVKTILKTPTSDDNQRAMLINYFNKNF*
Ga0055584_1001510775	F029927	N/A	MKPVNTKSLFHLLCNTLEKLDRYEIDVSQATAVSKVVSQCTGLLNYELKRAALMTNPEFKQEHRNLESKNFDSLPE*