Scaffold Ga0062389_102228806

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0062389_102228806

Scaffold Ga0062389_102228806

Overview

Basic Information
Taxon OID	3300004092 Open in IMG/M
Scaffold ID	Ga0062389_102228806 Open in IMG/M
Source Dataset Name	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	721
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002844	Metagenome / Metatranscriptome	526	Y
F035407	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062389_1022288061	F035407	N/A	GLALGTDVDNEVLRQLAEGSELADLVWEAPDEFTAEHAQAFKDAMRAHLTGDAERASQLWEDLRAVWSHAWSSNYAVLEFMQGAGLSRFAPVKPQRWVIASFEHHTSPHGLPHPHVHNIVLTSLTTAANGH*
Ga0062389_1022288062	F002844	GAGG	MTSLPTPYAAAQIAEFLDEHLSWSAWWDKHDGLWRVAEDDPGSDLYAASRDADVVIRYMRAHDREPRCPRLAPPS*

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