Scaffold Ga0062387_100081226

Overview

Basic Information

• Taxon OID: 3300004091
• Scaffold ID: Ga0062387_100081226
• Source Dataset Name: Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1680
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000410	Metagenome / Metatranscriptome	1170	Y
F013037	Metagenome / Metatranscriptome	275	Y
F031438	Metagenome / Metatranscriptome	182	Y
F054324	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062387_1000812261	F031438	AGAAG	MDFLRYRYVSTILLLAALAGCTQQQTTQELKEKTAQATAEVKHDAEAVAAGIREGWSRD
Ga0062387_1000812263	F054324	GGAG	MCPVHFYCDRTGHTRSARYAKQKWEKLYRAAVLGSDRSKLLQRIEDAEAAILKRSRSSSNPPGNNRKEQDAITRALHILSLLREAEREQ*
Ga0062387_1000812264	F000410	AGGA	MRRKLVWIEQQRFRGFGCSECGWRFQPSGRPDGASFDEMMRNFELHRDKAFTLHVCADHPKSRGHQEQER*
Ga0062387_1000812265	F013037	AGGA	VESKGLQVVQSGERTNTEGKPVSNLILLSISDSDYSSLRPHLEYVSLPNHLILHEGG