Scaffold Ga0062384_101007069

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0062384_101007069

Scaffold Ga0062384_101007069

Overview

Basic Information
Taxon OID	3300004082 Open in IMG/M
Scaffold ID	Ga0062384_101007069 Open in IMG/M
Source Dataset Name	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	596
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026656	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062384_1010070691	F026656	AGGAG	MPQTPARRAASESPGVAHLVRLHHRRRGWAWVATGSAIGLVVFLAIGVNLTGTTGILGVAAVFVLLALAVAGLVVTAVDTSRIHHSDAAVQASAKGSVSHYPLYAHAHRYPPRHHGSWVFGIVMLVAGTGIAVALLPAQVNSWAYVAGAEHQDTFTPVS

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