Scaffold Ga0062384_100000609

Overview

Basic Information

• Taxon OID: 3300004082
• Scaffold ID: Ga0062384_100000609
• Source Dataset Name: Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9405
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y
F004095	Metagenome / Metatranscriptome	453	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062384_1000006097	F003337	GGA	MSVSGLRNFTSWVMVVLCPLTLLAADTGSAILHSEGGVWVNGAEVVNSTAVFPGDVLETKPGFVANLDAEGSSVLIQPESVVKFEVSYLSLEHGSVSVGTSTLMSVQVNCIKVEPVSNERTLYDVTDVSGTVQVAARKNDVNIRQSSVLRKASSESGSSQSATVHEGQQATRDETQTCGAPPRPESPGHALNTKWLEIGVGTGVGVLVLCLLLCTGKGQNNVSPSQP*
Ga0062384_1000006098	F004095	AGGAG	MSGINGDKARFNRRRRQKISRRISNQKMLKSLAEKHLAPAGSQASQKEKVA*
Ga0062384_1000006099	F002101	AGGAG	MTTPLIALPLSTSDDGPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINATGEADSRDKFCMDIRSANPQQRIAFFVGGPEYLAAAPHSDAAPAERDPDALHKEMVAALLAQSSGNSSQHWGILEACKRISSVRSVSEARSRAIRETPRPSRWAEAIEQHSTPEDIHSQPTFAAVIAAERELL*