Basic Information | |
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Taxon OID | 3300004082 Open in IMG/M |
Scaffold ID | Ga0062384_100000609 Open in IMG/M |
Source Dataset Name | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9405 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002101 | Metagenome / Metatranscriptome | 593 | Y |
F003337 | Metagenome / Metatranscriptome | 493 | Y |
F004095 | Metagenome / Metatranscriptome | 453 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0062384_1000006097 | F003337 | GGA | MSVSGLRNFTSWVMVVLCPLTLLAADTGSAILHSEGGVWVNGAEVVNSTAVFPGDVLETKPGFVANLDAEGSSVLIQPESVVKFEVSYLSLEHGSVSVGTSTLMSVQVNCIKVEPVSNERTLYDVTDVSGTVQVAARKNDVNIRQSSVLRKASSESGSSQSATVHEGQQATRDETQTCGAPPRPESPGHALNTKWLEIGVGTGVGVLVLCLLLCTGKGQNNVSPSQP* |
Ga0062384_1000006098 | F004095 | AGGAG | MSGINGDKARFNRRRRQKISRRISNQKMLKSLAEKHLAPAGSQASQKEKVA* |
Ga0062384_1000006099 | F002101 | AGGAG | MTTPLIALPLSTSDDGPAKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINATGEADSRDKFCMDIRSANPQQRIAFFVGGPEYLAAAPHSDAAPAERDPDALHKEMVAALLAQSSGNSSQHWGILEACKRISSVRSVSEARSRAIRETPRPSRWAEAIEQHSTPEDIHSQPTFAAVIAAERELL* |
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