Scaffold Ga0063454_101340458

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063454_101340458

Scaffold Ga0063454_101340458

Overview

Basic Information
Taxon OID	3300004081 Open in IMG/M
Scaffold ID	Ga0063454_101340458 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	602
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location Name	Hopland, California
Coordinates	Lat. (^o)	38.99297339	Long. (^o)	-123.0674491	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018092	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063454_1013404581	F018092	AGGAG	MPITPFLDGEHFDVETTRVLGVAYEMVCIALRIGDCDDDIKQAIATKIIALAKAGERHPDILCEEILKDIRRPQQWAASEAVRSSVLADPK*

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