Scaffold Ga0063454_100918329

Overview

Basic Information

• Taxon OID: 3300004081
• Scaffold ID: Ga0063454_100918329
• Source Dataset Name: Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 694
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location

• Location Name: Hopland, California
• Coordinates
  • Lat. (^o): 38.99297339
  • Long. (^o): -123.0674491

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001079	Metagenome / Metatranscriptome	785	Y
F021376	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063454_1009183291	F021376	GAG	LYVKHLTSLQFLTYVAFFAVVLGAMFRFVPGKAPPVRREPYPEDELGAHDRKTAKYFVAGGF
Ga0063454_1009183292	F000280	GGAG	MAAEEPEGRQAPARPLVGYRDVGEDVRHSRGSLIRAWIILAALVIFYLGWTLIVFFLEPGLR*
Ga0063454_1009183293	F001079	N/A	LPYVSWSSLTIAAVPADAWPQVFGSMQALKGHVQEYPGCQKLEAFVHAEAEGAVRIHCYTTWDTPEQLEAYLERGYTFERMLVDVVGVTAQPTLVMEKIF*