Scaffold Ga0062385_10005268

Overview

Basic Information

• Taxon OID: 3300004080
• Scaffold ID: Ga0062385_10005268
• Source Dataset Name: Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4010
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000272	Metagenome / Metatranscriptome	1408	Y
F004586	Metagenome / Metatranscriptome	432	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062385_100052685	F004586	AGGAG	MTTIDKQTKCAHLPCRCSVQADDKYCGQSCKEAGSKEVEIACQCDHTVCPLTV*
Ga0062385_100052686	F000272	AGGAGG	MSQTVVERTAEHISEAARRASRASSAIADAIDDGVGVARRAAKQGGDAAEELLNDTTQRIQRHPVLTVAASFAAGVTAGTLLGWMIKRR*