Scaffold Ga0055512_10000406

Overview

Basic Information

• Taxon OID: 3300004072
• Scaffold ID: Ga0055512_10000406
• Source Dataset Name: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3461
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.107521
  • Long. (^o): -121.649681

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041289	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0055512_100004064	F041289	AGAAGG	MTEDLLDYWVRLLKPFFPANAWIVTRYAKDDHIIEIDWNLDNEPGRPNRRSRKIQITISNGAIEDYLDKDKKEREVFESSLTKLIQERYNLVDPDKQAPSGASSSADRLFIAKDTLNA*