Scaffold Ga0055438_10144084

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0055438_10144084

Scaffold Ga0055438_10144084

Overview

Basic Information
Taxon OID	3300003995 Open in IMG/M
Scaffold ID	Ga0055438_10144084 Open in IMG/M
Source Dataset Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	701
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.04565	Long. (^o)	-121.866287	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020982	Metagenome / Metatranscriptome	221	N
F041239	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0055438_101440841	F041239	AGG	LWEERDYKACGASRECRGRFILGKLFDRDTRKLQSAWLGAFGTRVLGPPEIRTSEITKSQWQLILTHMGASPDEIADVQAR
Ga0055438_101440842	F020982	N/A	TYTLELEAIEESVFKAHARLSPSGPEVSVVDEASDAALKQAEAGIKSVIEQREAGAVVRERLEERTYGDVKYTIIVRTEATRVVAELYFIRSNAQPRRPGPGTFFALFEGKTKQGAIGQAERGLKAKLDKERSGHRGGTLR*

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