NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063042_138037

Scaffold Ga0063042_138037


Overview

Basic Information
Taxon OID3300003981 Open in IMG/M
Scaffold IDGa0063042_138037 Open in IMG/M
Source Dataset NameDiffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)635
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location
Location NameMid-Atlantic Ridge
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F048916Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0063042_1380371F048916GGAGMTLKQRFVTGLVCLTFLTGCSTAILSELAAPVANFGLGLYNADTYYSKECAWYEEVRLTQDTKQWLLQNNPPEIVSQDLAQVAKNNDIYKQVCDPKEPEDQDP
Ga0063042_1380372F002078AGGAGMDIATMFEGQGWFEIAGQVVLVFTALTGALPDKFVQKIPVLSTVWPIFNWLAGNVFNNINHPKGMAAVAEVEKEIDDAKAKVRDRAGMPDVLDGM*

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