Scaffold Ga0063042_114428

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063042_114428

Scaffold Ga0063042_114428

Overview

Basic Information
Taxon OID	3300003981 Open in IMG/M
Scaffold ID	Ga0063042_114428 Open in IMG/M
Source Dataset Name	Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Max Planck Institute for Plant Breeding Research
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1767
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location
Location Name	Mid-Atlantic Ridge
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065851	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063042_1144282	F065851	AGGAG	MSDNLIIPTHDAILPYMFKGVKWAIPNVGDNKETMNLALARLFEKVGEHLQAFSVRTDCFVPGPPTLGAVKHHHNMFVRLCNLIDTNTKRDNMERLEAHHISHERRAFKLYPIRYFDVKNDYCRRWIELCLQGLSNIAQLSENTWGNDWSEPTAQEMKKLFREGYRLMCVELFRVPVATAEKVFTEGEDGFFLTAEDFSVYDVSHIPTIEWIKHPALGSEFTEDELRPIATNNVPVA

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