Scaffold Ga0063391_1002007

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1002007
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 208602
• Total Scaffold Genes: 226
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (18.14%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002321	Metagenome / Metatranscriptome	571	Y
F015683	Metagenome / Metatranscriptome	253	Y
F045767	Metagenome / Metatranscriptome	152	N
F057390	Metagenome / Metatranscriptome	136	N
F072357	Metagenome / Metatranscriptome	121	N
F081877	Metagenome / Metatranscriptome	114	N
F084833	Metagenome / Metatranscriptome	112	Y
F101085	Metagenome / Metatranscriptome	102	N
F104959	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100200714	F072357	N/A	MIALTGIINVFNSIFDFIKKNPKFFLGVIFALLIVLLFKQCDNIKGLKNEIEIKEVEYENEKNRFFNNIENLKDSVEFVEEDNVYVKSLLRVREGELQLLDRKLNDAKINIQELADKLDENVEVKNIYVTDVSSEIVTNDVMTNIERDSVGNIGLGIKDSNQIYTLETQSWFKLRPFKDSLKLELVDRFGIGKSSQLKHNLNFSLTLSQLEMENGLTRVVVQPTDNNGNPIPPSILQIPFVNGVEFMDIKPNIIQSPPKRKSRRGFGMLIGPSYGLYSIDGSFQPTWGIGISVGYKIF*
Ga0063391_1002007165	F084833	AGGA	LVLKAYICYMKKILLILLTLISIVSYSQDLGEIQRHLLNLVNEERSNRGLSTFVTDTLINNGAKIHTDYLSTIRSYKQVSHTNPNLKYKYPSDRIKIASNSKYTNSSENVTAFTYDSSKTDLEIATQAHNNFMNSKYHKMNVLTEYGDYLNEGYILPSHYGHHVVYNKKLNAIIVVQMFP
Ga0063391_1002007169	F045767	N/A	MFGKNKINKMGIQDSIRRNIQILQEEKKVSLTEEKIVKGRFSMVPKNINKHSTIQNNKTFNVLFNEVRTLKSHGINQKVINENMVQVLSQMFDEEGPRFLDIVKEKLAEYLKSKLQLTDIEQEILVSAIGNTEMDEVSELFNDPRFLAQKISQAYSEDMGSKYSMVSTDNSDMVKKLEDTFVDKLKPVIGDVNSKMELKLKDIRDNMLS*
Ga0063391_1002007175	F101085	N/A	MSGNFTPHNDNEKSQGSSMVELINRLLGKIFLKKPVFFGMDEHKITLLVSPSMKIYGIYTSPDRLLKKFPFEEKKFLNLKDLRSWAENNEFSITFSAETPKLKRDLLMSLGDVMVESNGGKERNLSVVVMEELKKSKLPESIKEWAKENPEKFIRNIRHVQNILKK*
Ga0063391_1002007189	F104959	N/A	MEHTRENLKKLSLVEIKLICKEYSLHRTGTKTKLINSILDFIKPVPVTVSLPTEYKPPKGKKVIGIMMGESDKRKQIGKLREKNKVKDLYYSMSVHYYEVDKDFNFIDVD*
Ga0063391_1002007190	F081877	N/A	MNTKKDMEFKSEEEFRGVARRAVQILLYVVESKSPLLRKLKATNLITKIYGANQNGTVYFEVEIPFMVDDPDHGPLCKELDKILSAVINTFGDYHLNENMEFVTKTSDDEGDDMVGFLSSCSFDWTNHNDEYNAKAKYGFEYNWFSVKNIVHIPD*
Ga0063391_100200728	F002321	N/A	MENIDLNKEMAWVTFLHDGWETKWHPVTDASGKQLEWGLDGEGIMNHCRAQFNNSDNWVSFGIAQTSQMLHKNSVRDNL*
Ga0063391_100200740	F015683	N/A	MKCGMKKKIIKKMRKKLQKIAWKTNRWTTKISLLNLYLGGDNHKFGFQILNIDKGFVWSGSLFEVTWYFPTVTHSGELTVDILFLFEKWDNWCIDMTDRVMWGSGLSRWEKINRFIHSKFKSIR*
Ga0063391_100200745	F057390	N/A	MVYKDLYPDMFDDSDFDLWKSRNIRKEFLSYEWNMMVQEVAPDVFEFPFFNTKFCDNLVDILKTINWDQVNRWGTPVFSTNLKKFNLEKIMTHLVHDYIFSIVQKEWHLEGKKWKLLQPDNNVLKLQEGQEIRMHHDDVHISMYCKLDDESKGGDLVFEKYGKTIVPKQGYIYMYPGQITHRYGMKRVDKNDRYFLMTYCTSD*