Scaffold JGI25405J52794_10000474

Overview

Basic Information

• Taxon OID: 3300003911
• Scaffold ID: JGI25405J52794_10000474
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5754
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004741	Metagenome / Metatranscriptome	425	Y
F015636	Metagenome	253	Y
F031783	Metagenome	181	Y
F037087	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25405J52794_100004742	F031783	N/A	MKFRSLTVAALLLAGCATQQPQQTRAVSDTPTASDTPTPKSQIKNRDRDLYECERESAFAGAGDKRKTFDSCMKARGY*
JGI25405J52794_100004745	F037087	GGAG	MLLRDHPLMMYHRHPNWPPVWLCTDGYDQRSKGEIGMLKAVFRSDMQPPNRCFLHISHEGSEYLGCLLFDDHAFCHQVMELLKAHCNRTIAEIGSLDVTFTL*
JGI25405J52794_100004746	F015636	AGGA	VVYEPLIEICVEQYESLLKYASDSSPLYSRLKNSVKTEANTIAVLCDQDGAEMLRKVAKHFCPEALPQIEKAIRGAQVPT*
JGI25405J52794_100004747	F004741	N/A	VKILVDISPEHYDRILNECDEQSRIYAILKNGLVLHHFEAGYDTRTVEILCDKFHARMILAAAEMYCPEAVAEIEEAIRLSRTLH*