Scaffold JGI26437J51864_10000753

Overview

Basic Information

• Taxon OID: 3300003910
• Scaffold ID: JGI26437J51864_10000753
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7797
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024821	Metagenome / Metatranscriptome	204	Y
F056712	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26437J51864_1000075310	F056712	AGG	LSDIGIVARDARQYRTATAGIVGLLENIEKSLVRRLMKTSGKQPFLLVFIIVFLSMNKKTKKKVEPEKDENYWRVLGGL*
JGI26437J51864_100007536	F024821	AGG	MEGSTREKFIHTLMQYQEKFGQEKAAAIQEKFSQSREKIVADSASEIDWFPSWKKSQVLEDLLAKTYLELIAEMESEGLS*