Scaffold JGI26085J52751_1005144

Overview

Basic Information

• Taxon OID: 3300003908
• Scaffold ID: JGI26085J52751_1005144
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2348
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26085J52751_10051443	F019396	AGGA	LQWTQYLKLSEEGNPCMAQQTYEPLVSADGKTFCKNYSWPNEYQYIETSNRPLYTDEVAEWFFYNELKYIELFKDKPYAPEIIDIDYTTRKIYLKWYGESCNQVIYSGKEWPSKKWHKQIKDIMLDQYNEGIYKLTMYPHCHYIDDNDNMRAIDWYGCVPVDHPYVEEKYMQGIIHETAQFRLEETGAAVNHVLNLETMFKRSLGTHVLWGDTDMSYIYKEIFDDF*