Scaffold Ga0063011_10006884

Overview

Basic Information

• Taxon OID: 3300003891
• Scaffold ID: Ga0063011_10006884
• Source Dataset Name: Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing sample CP Core 1 1cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12113
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments → Hot Spring Sediment Microbial Communities From Chocolate Pots, Yellowstone National Park, Wyoming That Are Fe(Iii) Reducing

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.427936
  • Long. (^o): -110.588466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050736	Metagenome / Metatranscriptome	145	Y
F056130	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063011_100068842	F056130	N/A	LSYKLIIVGANLRSEVGGSLRRLTTIPFFRRNRAVSYTVSAMIITATIIALVMAAFIYAYQVLGRQRGGSEFEVAKKSILAFNDALENVAWTPGATHSARFTIQYGYLQLVPNTNNVSITATVNGQAQPLSNSTFPGSTGLIKYWLSTDYVSFGSNYESYILGNSSSVISGSTDSYGRSTIRQQAGWVTISLDYRVRAMRTSVIVVKGTQTNYVDVRVIKLKMLVSNAWSYINDFDLQAKTLSVRTASYRFSVSNSASSVSVQIGSVPASQVPIILVVPGQVVFNVVVAEVQVNV*
Ga0063011_100068843	F050736	AGGAGG	MPAPTISHVILTSALITVVIAVQVFYFYVVDNVWVEMVKRQLKEIADYVADTITNLYFLMNSTSTNPSLEKTLKLPLDIGGSGYSLEITLDQNNYAKTVKTTVLSKSWLNVNSWLPSGLKVNTGNPPPPKTEVIQSSGRTVVAGCRRVSSSIFVWIAYKV*