Scaffold Ga0063162_1000349

Overview

Basic Information

• Taxon OID: 3300003890
• Scaffold ID: Ga0063162_1000349
• Source Dataset Name: Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - Chocolate Pots Core 3, 1cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 490794
• Total Scaffold Genes: 784
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 536 (68.37%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments → Hot Spring Sediment Microbial Communities From Chocolate Pots, Yellowstone National Park, Wyoming That Are Fe(Iii) Reducing - Cp Core 3 , 1Cm

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.427936
  • Long. (^o): -110.588466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009686	Metagenome / Metatranscriptome	314	Y
F031713	Metagenome	182	Y
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F040370	Metagenome	162	Y
F042607	Metagenome	158	Y
F065185	Metagenome	128	Y
F069394	Metagenome	124	Y
F071164	Metagenome	122	Y
F074102	Metagenome	120	Y
F085609	Metagenome	111	Y
F091043	Metagenome	108	Y
F094469	Metagenome	106	Y
F096147	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063162_1000349312	F065185	AGGAG	MKITFDDKSFIECKKSDNPGKVVITISAKDHTDPLKKITNAVEITTDEFKKLISEI*
Ga0063162_1000349325	F085609	GAGG	MQDKVVAEAVRIEYEEKTGKLYIVFEVKDEKYKQDIKANWTKDIEFRLVDKSLVMG*
Ga0063162_1000349357	F040370	N/A	MSSNNFFRSDLFGIYNIIQASMIVYPKEIVIATLRDFFSKDSYYHFSKDQWGFPNTVDHTDLPPGADLPYGPGAQPELNPHPILPTRLFIGENYRYDGIFYPAVLVKSGGSRYVPISINRDQGLVKYDNILYVDGYGNETIVRKPIAFLTSGAWEGSIIIDVMSRSLRARDDLVELIGMCFTEVHFDTLHEIGIVVKPISIGAPSETDDRNDKLFRQSLTLDIRTEWAREIPISNTIDAILFTASFGDLSKPNSPIAANLTVNTEVNTSDMLLKL*
Ga0063162_1000349403	F069394	AGG	MIKKSYSVQMSYDVTDSERHQAERALVYFKAAEKYLTQASDHLNIMKTPFKDNPDMTPDDVMKARAVIRRFRDKAIENFDRFKKVAFDCVNLMQTFSSDTQTLKLMKSFISSVDDLEVSVNQFADLFNDLQSKDFVKDVVSAIESIQKQCDEIDEIIDERIKSHIQTNILATSWVDSISNDLQMKIEKKTPLIVDLYNQRQEQLNEAVEERSTGSSQEKW*
Ga0063162_1000349417	F094469	GGAG	MNKNALKKILEHPDKDEIIAKLVLDYPPKDIHEWLAGKYTNVSEAKFVVAEKSIKVFKDNYLDVYSMIREDMMKTKQAVATSTEEQLELAVKNNSTYKSKMLELAGKEIDVRQMVAHLCIAIETRLGQVFDEIQEDPRNINTKIDRVLIEYGELLGGLLEKYYKFTENPADMVIQHNVTLQAVDQHISVFHDVIRDVLSQLDLESSMLFMELFQAKMAKLKAPTQEKPLNTDMKLAEAKLLNETINQKLNNQ*
Ga0063162_1000349418	F071164	GAGG	MRISELLNAMASWLESPNNEALLLAEADEKCMQVVAESCVLAAALLKKAADEVDVLEPPSASAITPESVEETAALAQALDESGDPQLKRVASVLDELLLTIAAPPNAYAERKDLVDSRAEEIRKKYEGPRKDLHKYNQIEKSEKAIENSGFTKEYKILEAPLSSRYCPDHPGAQIARVGEHVWQCELDKKTYNFETGFELANGSKVPGGDVSQQTNGLDTPFHAIFDTREGRLGYNK*
Ga0063162_1000349421	F038776	GGAG	MPKFNIDYSGLANQITKRAYRLSDVKDQLETVAFDVVRFKDGDKGAELWQVQSADDGDYIVALYDEEEVEKTASANPWGVYVSKNGHDLQVSYKGDPLVRFAASKLGIPSSELHKAEQYLPEKLATNKKLVKALLSELSETARLEVSKRYPELV*
Ga0063162_1000349431	F036462	GGAG	MSQPVRLGDVLGSNLEEDFKNFDLTEIQKVLEQLRDADAIDLAHAELLQQQALRGADILADYLAKMVKTVAYLESKVNSTKNKVSLDYVAPDGSRTTVDMKKWAGESSPEVEAVQIKLAEAKGGKMALDRKYEILIKAHHHFKDIAGGLRKTILGYSSGAGNAPGEGYE*
Ga0063162_1000349432	F042607	GGA	MAVRVVDNKKLEMTDDEWDMYQKICKSYTDMTGKGEDLFMDLFETNDDGIIVFLKPPSKRRTSLEVFLFLMSLMQHQHLRLMHQQIDEAVAEIKKNNKATK*
Ga0063162_1000349444	F096147	AGGAGG	LSDHTQNFLIEKAINTFVYAQMSVEALKKNFVPKYLATGEQKFYRFLILYALNKLIYIEKGSFKGKSPELEFLDYYDQFIILYRREGEDVYLELARVFRKAAHKVYRVMLKKNMTERNAKFLNLV*
Ga0063162_1000349465	F091043	N/A	MDVFHRNISSFFEELLNDLQCQRDTKAYIVSIYGKFKTAEFDLSKDSVTLLFAQARDKQDFLVYQNLGDWIFFANTIAPQHLQFASKEYYDTVARLSYYSCYKLINREWKLFEELADDFLFLEEQVRQRLPKLNMKTSEGIYIDPFGS*
Ga0063162_1000349481	F074102	AGGA	MKKQKTIVPFHFKDMTHQQMVDYLNEVYPVSLKHNEDLVNRVHARYPVLDKSEVGIIVKAVFASFRDLLVLGKILNFNSLFFDTKLHFFDHRRGGRILPSLKVRISTPPKLRKHDK*
Ga0063162_1000349486	F031713	GGAG	MSNKNVTIDLKARKDIDGQTFYVGKIKAPVLIDCSMGAVFLVFVSDKGDEQLQIALMDNKELDD*
Ga0063162_100034997	F009686	GGA	MTEREMFEKSFQRPKNYFKLSAREQWDIDARLGILDWNGDGLTEEDLKRFDEHYEK*