NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063162_1000349

Scaffold Ga0063162_1000349


Overview

Basic Information
Taxon OID3300003890 Open in IMG/M
Scaffold IDGa0063162_1000349 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - Chocolate Pots Core 3, 1cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)490794
Total Scaffold Genes784 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)536 (68.37%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Associated Families14

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments → Hot Spring Sediment Microbial Communities From Chocolate Pots, Yellowstone National Park, Wyoming That Are Fe(Iii) Reducing - Cp Core 3 , 1Cm

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.427936Long. (o)-110.588466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009686Metagenome / Metatranscriptome314Y
F031713Metagenome182Y
F036462Metagenome / Metatranscriptome170Y
F038776Metagenome / Metatranscriptome165Y
F040370Metagenome162Y
F042607Metagenome158Y
F065185Metagenome128Y
F069394Metagenome124Y
F071164Metagenome122Y
F074102Metagenome120Y
F085609Metagenome111Y
F091043Metagenome108Y
F094469Metagenome106Y
F096147Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0063162_1000349312F065185AGGAGMKITFDDKSFIECKKSDNPGKVVITISAKDHTDPLKKITNAVEITTDEFKKLISEI*
Ga0063162_1000349325F085609GAGGMQDKVVAEAVRIEYEEKTGKLYIVFEVKDEKYKQDIKANWTKDIEFRLVDKSLVMG*
Ga0063162_1000349357F040370N/AMSSNNFFRSDLFGIYNIIQASMIVYPKEIVIATLRDFFSKDSYYHFSKDQWGFPNTVDHTDLPPGADLPYGPGAQPELNPHPILPTRLFIGENYRYDGIFYPAVLVKSGGSRYVPISINRDQGLVKYDNILYVDGYGNETIVRKPIAFLTSGAWEGSIIIDVMSRSLRARDDLVELIGMCFTEVHFDTLHEIGIVVKPISIGAPSETDDRNDKLFRQSLTLDIRTEWAREIPISNTIDAILFTASFGDLSKPNSPIAANLTVNTEVNTSDMLLKL*
Ga0063162_1000349403F069394AGGMIKKSYSVQMSYDVTDSERHQAERALVYFKAAEKYLTQASDHLNIMKTPFKDNPDMTPDDVMKARAVIRRFRDKAIENFDRFKKVAFDCVNLMQTFSSDTQTLKLMKSFISSVDDLEVSVNQFADLFNDLQSKDFVKDVVSAIESIQKQCDEIDEIIDERIKSHIQTNILATSWVDSISNDLQMKIEKKTPLIVDLYNQRQEQLNEAVEERSTGSSQEKW*
Ga0063162_1000349417F094469GGAGMNKNALKKILEHPDKDEIIAKLVLDYPPKDIHEWLAGKYTNVSEAKFVVAEKSIKVFKDNYLDVYSMIREDMMKTKQAVATSTEEQLELAVKNNSTYKSKMLELAGKEIDVRQMVAHLCIAIETRLGQVFDEIQEDPRNINTKIDRVLIEYGELLGGLLEKYYKFTENPADMVIQHNVTLQAVDQHISVFHDVIRDVLSQLDLESSMLFMELFQAKMAKLKAPTQEKPLNTDMKLAEAKLLNETINQKLNNQ*
Ga0063162_1000349418F071164GAGGMRISELLNAMASWLESPNNEALLLAEADEKCMQVVAESCVLAAALLKKAADEVDVLEPPSASAITPESVEETAALAQALDESGDPQLKRVASVLDELLLTIAAPPNAYAERKDLVDSRAEEIRKKYEGPRKDLHKYNQIEKSEKAIENSGFTKEYKILEAPLSSRYCPDHPGAQIARVGEHVWQCELDKKTYNFETGFELANGSKVPGGDVSQQTNGLDTPFHAIFDTREGRLGYNK*
Ga0063162_1000349421F038776GGAGMPKFNIDYSGLANQITKRAYRLSDVKDQLETVAFDVVRFKDGDKGAELWQVQSADDGDYIVALYDEEEVEKTASANPWGVYVSKNGHDLQVSYKGDPLVRFAASKLGIPSSELHKAEQYLPEKLATNKKLVKALLSELSETARLEVSKRYPELV*
Ga0063162_1000349431F036462GGAGMSQPVRLGDVLGSNLEEDFKNFDLTEIQKVLEQLRDADAIDLAHAELLQQQALRGADILADYLAKMVKTVAYLESKVNSTKNKVSLDYVAPDGSRTTVDMKKWAGESSPEVEAVQIKLAEAKGGKMALDRKYEILIKAHHHFKDIAGGLRKTILGYSSGAGNAPGEGYE*
Ga0063162_1000349432F042607GGAMAVRVVDNKKLEMTDDEWDMYQKICKSYTDMTGKGEDLFMDLFETNDDGIIVFLKPPSKRRTSLEVFLFLMSLMQHQHLRLMHQQIDEAVAEIKKNNKATK*
Ga0063162_1000349444F096147AGGAGGLSDHTQNFLIEKAINTFVYAQMSVEALKKNFVPKYLATGEQKFYRFLILYALNKLIYIEKGSFKGKSPELEFLDYYDQFIILYRREGEDVYLELARVFRKAAHKVYRVMLKKNMTERNAKFLNLV*
Ga0063162_1000349465F091043N/AMDVFHRNISSFFEELLNDLQCQRDTKAYIVSIYGKFKTAEFDLSKDSVTLLFAQARDKQDFLVYQNLGDWIFFANTIAPQHLQFASKEYYDTVARLSYYSCYKLINREWKLFEELADDFLFLEEQVRQRLPKLNMKTSEGIYIDPFGS*
Ga0063162_1000349481F074102AGGAMKKQKTIVPFHFKDMTHQQMVDYLNEVYPVSLKHNEDLVNRVHARYPVLDKSEVGIIVKAVFASFRDLLVLGKILNFNSLFFDTKLHFFDHRRGGRILPSLKVRISTPPKLRKHDK*
Ga0063162_1000349486F031713GGAGMSNKNVTIDLKARKDIDGQTFYVGKIKAPVLIDCSMGAVFLVFVSDKGDEQLQIALMDNKELDD*
Ga0063162_100034997F009686GGAMTEREMFEKSFQRPKNYFKLSAREQWDIDARLGILDWNGDGLTEEDLKRFDEHYEK*

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