Scaffold Ga0063282_1012360

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063282_1012360

Scaffold Ga0063282_1012360

Overview

Basic Information
Taxon OID	3300003878 Open in IMG/M
Scaffold ID	Ga0063282_1012360 Open in IMG/M
Source Dataset Name	Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0142_20120611_metagen
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1718
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Plastic Marine Debris Microbial Communities From The Atlantic Ocean

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	39.978	Long. (^o)	-68.882	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012788	Metagenome / Metatranscriptome	277	Y
F023447	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063282_10123602	F012788	N/A	MLNTNITTEIQTTIDELNQYLNGNVTKTSLQITLDELISKL*
Ga0063282_10123603	F023447	N/A	METQAFMGTGELIPRLMAQVGSASFGMALAKKNGFLNADGGLSALGMQRNGMNAEQRAIDRAGGTGIYNPTTNRVTQY*

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