Scaffold Ga0058691_1000369

Overview

Basic Information

• Taxon OID: 3300003838
• Scaffold ID: Ga0058691_1000369
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - At.P.rz
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33277
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (95.45%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 20.6863
  • Long. (^o): -101.8747

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097652	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058691_100036925	F097652	GGAGG	MANWVFITPTVDEAPFAWSPLMERFRLTRGVSVVEVSPGQYETTRYDAYTNELGAENLPQNPNQDTEFWPAERAGLHYFRGGYEWIVDDQIRSDIIASGAATAANFTPV*