Scaffold Ga0007863_1000274

Overview

Basic Information

• Taxon OID: 3300003820
• Scaffold ID: Ga0007863_1000274
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7840
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010743	Metagenome / Metatranscriptome	299	Y
F082064	Metagenome / Metatranscriptome	113	Y
F104498	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007863_100027410	F010743	GGA	MDNLELELKLTVAHINTVLKHLSAGVYSEVADLIALLHGQAKPQIEASAPENATEKPAAE
Ga0007863_10002744	F104498	GAGG	MTGYVKTTTDNQFVEYPYGAEELMRDNPGLGYTPYSDFVEIFPTTDAYNVHGYRIQYVEIDADPTYDGKXQTVSRSEQPFVRDGKWVFSWNVRDLTAEEIANMEKMQQEMQQRG*
Ga0007863_10002749	F082064	GGA	VVTAINWVCTGTDGSVTSSSSGTANLGTPNPAEFVSYDDITQSLAAQWVSQCISMXGVEELIAVQIGQLTKPISQSQTPPF*