NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007817_1002096

Scaffold Ga0007817_1002096


Overview

Basic Information
Taxon OID3300003804 Open in IMG/M
Scaffold IDGa0007817_1002096 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1619
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038078Metagenome / Metatranscriptome166N
F043767Metagenome / Metatranscriptome155N
F045533Metagenome / Metatranscriptome152N
F045559Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0007817_10020961F045559N/AGISNVINSLCGTDFSNESLMHXRMNRIHVLKWKIKDXDPNWHLTDQVAXMEHQILDLLDGIDHMKPWNEIGNKLKYMALFSIIENLXXIHPRWGIHLESLETPEKXHWCKCYKCHEARMQKYKIVIQDNPETEXLDEXS*
Ga0007817_10020962F045533N/AMAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITKIDPSWSFYDSNDYLIDKILRYINAINSNKEWNHEDNIKLFTEVRRNMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK*
Ga0007817_10020963F038078N/AMAEKYEKCTVEMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKTKVLANSEYWSLVDYTGMTIGRIFRCIDTINVEEKWDSKSNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYNTTCPCSQCSTEEGKEDTISSSISKLNI*
Ga0007817_10020964F043767N/AMENQEQGQSNGHSLFFSRHPSEANAYRRKRLWREKALEALDLLNHIKLEEMATSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKYDC
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