Scaffold Ga0007817_1000200

Overview

Basic Information

• Taxon OID: 3300003804
• Scaffold ID: Ga0007817_1000200
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5121
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F004924	Metagenome / Metatranscriptome	418	Y
F005705	Metagenome / Metatranscriptome	392	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007817_10002001	F004924	N/A	KLAEVEAMLLKAKCDGEKLVELECFNELENAMSTLLQTVDYYVD*
Ga0007817_10002006	F000652	GAG	MTGFQSKRAQALAKFKGAGMKTVRIETLLTQELEVPDNWAREDVLDFLAEYQSFRTAFQGVSNEEQTARIVDLGVIEERVTEMGEEAFDE*
Ga0007817_10002008	F005705	AGGAG	MKIVIKVPQKTRAHFVLFAENTPFKPKRVESKIKYKRNPKHRGRDE*