Scaffold Ga0007811_1000064

Overview

Basic Information

• Taxon OID: 3300003787
• Scaffold ID: Ga0007811_1000064
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15578
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F011665	Metagenome / Metatranscriptome	288	Y
F026556	Metagenome / Metatranscriptome	197	Y
F033308	Metagenome	177	Y
F063276	Metagenome	129	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007811_100006411	F011665	AGG	MSNQINLSPITQFIQQLRAAELSQSKEVKIPIQQARLLSLALNEIQDKLVQDYENLYNSLKTSTDNEVVSVMLDGGDFKS*
Ga0007811_100006418	F033308	GGAGG	MTNAKQLTDELIYRMKTTDLNKFEIKREVGPNWLPNGTVPFNISASKGIATFTVWAESIQDAEDQVSQYLERDEDE*
Ga0007811_100006421	F063276	AGGA	MQDSTFRQNLDFYSVLLLGILLVVFAVYYNYTHPHVVVKYDCSIAEISPDYPIPVKEACRKLRAENILNKPK*
Ga0007811_100006422	F070810	AGAAG	MKENFKITIPWHNQDNNWWNDTCADVVEVFGLPGERYTYHPRYEDMAFYFNSKKDYELCKILLSDRI*
Ga0007811_100006424	F026556	GGAG	MTSALIKLLIGIAFIIIALAIGPIIGIWSLNTLFPQYLNIPLTWQTWLAFNILFGSSVAGKFRK*
Ga0007811_100006426	F009462	N/A	MLWANTEHLKQLKEMTMELHESVKDTYKEMIIKEHEGFRLVLKKHEVLAPKGLFSINLEQQTLKDGEITDTATYNYFMTTEELQALAYGLTA*