NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0005853_1015954

Scaffold Ga0005853_1015954


Overview

Basic Information
Taxon OID3300003754 Open in IMG/M
Scaffold IDGa0005853_1015954 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1584
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Ontario, Canada
CoordinatesLat. (o)43.933506Long. (o)-78.003845Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032537Metagenome / Metatranscriptome179N
F052385Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0005853_10159541F052385N/AARLADARRLIVVPVTEGYLVVTPEVTAPASEPGARARIATLEQQFGEGVHEGEFLSGCENAWPSLTNDSRSIEASVRILSTKTLNSAVQGLLQGPFVWKGVRVTAPEGGADAYQDGATFTQQLMKLQWGPVNAPEVEQDIDMQQIVKHPGGRDMRGPARLLSMVAAMPQHRPRFVPIGQDRTSILVIPQTTQYPFLAWNYDDSRFRHWKPVGKNSLKRLEKCPSKDQSASDRSKASGKTRTRDEDDGSGDTQRTPPMANQENSANGDGSALVPDNE*
Ga0005853_10159542F032537GGGGGVNLLQDDVFPPSCEGSRRKTEGRQESGTDVGSAAAAQHTHTHTNTHAQVGKHQGHDDYTRLSRANKFSTALDKLGNNQGMEGAALGVEKATEGEEEAAVRGKRAVAQGEDEPEQRLCGGCQKPKARTDFATQEWEKADAWSREAARRCKGCAPAGAQPSMGGDGQGSRPKRKAAVRTQQEGQGGSSEKCEERRLEQVLCPGGCECGNALAARGSPPLVQV
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