Scaffold Ga0006121_102275

Overview

Basic Information

• Taxon OID: 3300003727
• Scaffold ID: Ga0006121_102275
• Source Dataset Name: Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 3A (Custom Analysis)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 572
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 351MFTsu5.1 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location

• Location Name: Colorado Plateau and Sonoran desert
• Coordinates
  • Lat. (^o): 38.42
  • Long. (^o): -109.4099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030355	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0006121_1022751	F030355	N/A	DLISSLALRGHAPHRASRSIALDVSPVSSPTGVFATRRINAFRHAACCSRSGPVARNGLSLACNGCSFSEHPSQGQRSGPATSLPSARLHCPFGFPLRHRFPVGPGRRRHRRVNPVAALARASIGCSCGLHSPSGLLHPSGSKRSTASAAIRPAFRIRPISSRSPKPVLFLGSASDHRSWSATFPEARCS