Scaffold PicMicro_10002609

Overview

Basic Information

• Taxon OID: 3300003702
• Scaffold ID: PicMicro_10002609
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39789
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 18.55
  • Long. (^o): 81.716667
  • Depth (m): 5000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017150	Metagenome / Metatranscriptome	242	Y
F017492	Metagenome / Metatranscriptome	240	Y
F042379	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
PicMicro_1000260914	F017492	AGG	MIVDKLVPHGIKSIFQSERDRLRNADEPYMMRPKNNRKPLKGVARKLYLDGLAKLNKAEALANSGLGLSRIKVPIEKEKDNET*
PicMicro_1000260923	F017150	AGGAG	MADRINLLVDYEDQADWLQDSIVIENVIMGQAHDQLIVELEQAVYDNTRSMYNPPSSHISIVGFSPADSDVIVKSGVNYWVDSENIFAQ*
PicMicro_1000260938	F042379	AGGA	VWYNSSMKIEMTFAPGWTQTIDTSDEDQERVDLATYISDTFKAVNGFRPRWWDLREWSVEDLRAEAKSLEDEVVASVERERAEEARRQQEMADHHMAVAKAMKPAGKTYKPFALRFRALGYDV*