Scaffold Ga0003071J53072_109976

Overview

Basic Information

• Taxon OID: 3300003696
• Scaffold ID: Ga0003071J53072_109976
• Source Dataset Name: Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1330
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location

• Location Name: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -73.604444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005443	Metagenome / Metatranscriptome	400	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0003071J53072_1099761	F005443	N/A	GTEVEFGRISTVGRSTVFAQKVEVPSKPYRLTVSHQETGAGFSKRRRSLVRFDKTVASDVDVTKNVNVAAYMVLDAPIGALNASTELSNVLANLLSFGASLGASTTILYDCTGNGAAAMLSGGL*