Scaffold PicViral_1006536

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1006536
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3305
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055656	Metagenome	138	Y
F081887	Metagenome	114	Y
F082712	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10065362	F055656	GGAGG	VEIFGIILFMNMCIFGYFIYNFTQYRKREKYRTQELNHRVQYLLDQMEHDYQESIVAEPVTNIFREHVIEEISKQRLVYDKRTGKFIRLRQID*
PicViral_10065364	F082712	GAGG	MDPNKENNKKWKKVRIFDNYEDANELRCVLLDNDDTGQLLIKVRRCSVDGRQFKVKTHFRELKESKGKKDE*
PicViral_10065366	F081887	N/A	MIIEKNTICYTSEIGHNNFWYPSNNKVFIKEKCDAERLSWISGGSSVAIRVLKSNLVPRTLSENTTKNTSPPTKNDYTIVWIEKCSAS*