NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PicViral_1005931

Scaffold PicViral_1005931


Overview

Basic Information
Taxon OID3300003690 Open in IMG/M
Scaffold IDPicViral_1005931 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4588
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location
Location NameMid-Cayman Rise, Caribbean Sea
CoordinatesLat. (o)53.0Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004908Metagenome / Metatranscriptome419Y
F011291Metagenome / Metatranscriptome292Y
F025764Metagenome200Y
F034595Metagenome / Metatranscriptome174Y
F062819Metagenome130Y
F064626Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
PicViral_100593111F062819N/AMDNYVGIQDVFRIMSYTRLLKLKDELGVKALRDPRTAGELLARKNYERVMTILWKRYEYGIEDAMEDYRRQDHIDEIATIKRP*
PicViral_100593113F025764GGAVEKITSVKDLINIDHNVASVSYGGLAGMLVATVKWAGKSIREDQTAYALQLLERTTEEIRRVDNVVERYNRRFNN*
PicViral_100593114F034595N/AMNINDRLDNMSKGELISLIKEIKITCESNRNKAVNKHGNPLKNTFNFILRLIKGEI*
PicViral_10059315F011291GGAMDRYEINVWKDAELLTKEVVEFASNEECYSYVTDKYYAPGTWTGSHQNKAGVTLNRPPMGIRITWSKKGNTNYKPKKLSTEEKKLQRELYDSITPEVIKELGPNEMLAKVRKDYYGNPDAKGMEDKK*
PicViral_10059317F004908AGGMERQEYQLTKKIVDLHQVEDGAINPKTGLTEKPSWYVRFEDMSDRVMFKSRLLEFLSMGFRKTVENFKAGKATTSVGGDARFWVVVFQDYEVRLQTKSQIMDVVTEGHRHREDDDNAKFERRNGNTEEQFILE*
PicViral_10059318F064626AGGAMKELRKVTEKIKKVLIEAERSNEEFPWIVDKLSLIKMYDMGLPIHVVLGLIDEFVEDVEERKRIKALEGFDKEHVQKVYDKVNIKWNDRNIN*
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