Scaffold PicViral_1005589

Overview

Basic Information

• Taxon OID: 3300003690
• Scaffold ID: PicViral_1005589
• Source Dataset Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4171
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Mid Cayman Rise - Piccard2013-Plume

Source Dataset Sampling Location

• Location Name: Mid-Cayman Rise, Caribbean Sea
• Coordinates
  • Lat. (^o): 53.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021118	Metagenome	220	Y
F045682	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
PicViral_10055893	F021118	GGA	MQVAKDAHKKSLSSSVPLDPKILRNNLQVCVLSAEHFVLVVELEGNIEGAFIGVTHQLWYSRKKQATDLFFYVTDKGVGWGAKMMRRFISWSKENRGVGEIMLGIGSGIGDPDRTRKLYERMGAIKIGDNFILPEE*
PicViral_10055895	F045682	AGGAG	MAIMNEKPVARGMDVPPGRTVPDESPGAVLNAESVPVEPEVDDKLKEPTTEEEGVIDMALGAIKDFIWDEGYDEIVSRLEQSQGDIQQAIGEMAGRMVNREVMASDEGGNPISRDILYALGAEVVNELYNVAEKEGIYKKGDDRQDQEAQGESLIYAEEKYVEMGDDQIDPSGSMKLAANAMRGGYPEEETLTRM